PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do016572.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family bHLH
Protein Properties Length: 551aa    MW: 60419.6 Da    PI: 5.7143
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do016572.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.51.5e-10120166455
                 HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                  h ++Er+RR+ + + f++L +++P  a      K +K+++L  ++eY+++L+
  Do016572.1 120 EHVIAERKRRETMHHQFSTLASIIPDiA------KTDKVSVLGSTIEYVHHLK 166
                 5999**********************88......*****************95 PP

2HLH25.13.3e-08389431555
                 HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 h ++Er+RR+++ + f++L +++P          sK++ L  +++Y+++L+
  Do016572.1 389 HVIAERKRREKMHHQFATLASIVPDI--------SKVSLLGSTIDYVHHLR 431
                 899**********************8........8**************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.897116165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-13120179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.9E-8120165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.47E-10121170No hitNo description
SuperFamilySSF474596.8E-14121180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-12122171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.36E-8377435No hitNo description
PROSITE profilePS508888.696384433IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-11388444IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.84E-12389450IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.9E-6389430IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-8390436IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516719.507483551IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 551 aa     Download sequence    Send to blast
MQQLAESLAN ELWSEPPQEQ QQEQQDEPQQ FILSPTGFPF LGNLNNNASG SCPTVVSAAG  60
GSDNTFSFTD GSSGPLNFTA QEETRRQSVA TDSTVRKCFS SSSTMEKKSS GRKACSSVKE  120
HVIAERKRRE TMHHQFSTLA SIIPDIAKTD KVSVLGSTIE YVHHLKDMLR TLQEQQHQHS  180
SSSADESPTT LNARCCIGSE DDGAASPKIE ADVRGTMILL RVVCREKKGS LDIALDHIEV  240
HTEMNSSANH RWLAELENED LGELDFIDPL SMEQLAKSLA DELWKQPTQE LQVQLDQRPQ  300
GTYPTGFSFL GDIGKSYAEG FPKAIGAGGD DSMFSFIDGN SKSKQLSFSA RQPKLEGNAS  360
AIAGRFGTPS PMTMETKGSR RESLGVHEHV IAERKRREKM HHQFATLASI VPDISKVSLL  420
GSTIDYVHHL RGRLKTLQEE HCQRTGSTAE SSPPLDARCC IGSEDDGDES PKIEADVRGT  480
TVLLRVVCRE KKGVLIMVLK ELEKHGLSIT NTNVLPLTES SLNIIVTAQI EDGSSTAVEL  540
VNNLNSALKR F
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1392397ERKRRE
2393398RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008659077.11e-128PREDICTED: transcription factor bHLH18-like
TrEMBLK4AKH01e-143K4AKH0_SETIT; Uncharacterized protein
STRINGSi039393m1e-143(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP138961725
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22760.11e-22bHLH family protein